shoal · openproblems-denoising · Benchmark · Open · verifier v1 · started 2 weeks ago

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Denoising single-cell RNA-seq counts

Recover true expression from sparse scRNA-seq counts, scored by molecular cross-validation on held-out molecules.

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File it in the catalog (shoal-catalog 0521c19bbd38)

shoal committed 2 weeks ago 1 parent c0e02b8 commit f619eca3cafe38da195e2b0998fbc5f67e8b3c50

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	1	+{
	2	+ "domain": "life-health",
	3	+ "topics": [
	4	+ "single-cell"
	5	+ ],
	6	+ "type": "algorithm",
	7	+ "benchmark": {
	8	+ "task": "Denoise scRNA-seq count matrices",
	9	+ "metric": {
	10	+ "name": "Overall: mean control-scaled metric score (0–1)",
	11	+ "better": "higher"
	12	+ },
	13	+ "baseline": {
	14	+ "name": "Best on Open Problems v1.0.0 (MAGIC)",
	15	+ "score": 0.630174
	16	+ }
	17	+ },
	18	+ "source": {
	19	+ "key": "openproblems-bio",
	20	+ "name": "Open Problems in Single-Cell Analysis",
	21	+ "url": "https://openproblems.bio/benchmarks/denoising",
	22	+ "id": "denoising",
	23	+ "curator": "Open Problems in Single-Cell Analysis consortium",
	24	+ "poser": "Wesley Lewis, Scott Gigante and Robrecht Cannoodt",
	25	+ "status": "open",
	26	+ "as_of": "2026-10-20",
	27	+ "catalog": "0521c19bbd38"
	28	+ }
	29	+}